This repository contains the simulation data for the paper "The Impact of Mixing Treatments on Cloud Modelling in 3D Simulations of Hot Jupiters"
by Duncan Christie et al. (2021).   The primary contact for help with the data is Duncan Christie (d.christie@exeter.ac.uk or duncanchristie@gmail.com).

The directory structure is hopefully self explanatory, but is as follows:  Each run is stored in a directory  HDI_(mixing scheme)_f(fsed) where mixing scheme is either P13 or GC85 and fsed is the value of the sedimentation factor.  The clear sky data is stored in HDI_Clear.   The prefix HDI_ is included since the Exeter exoclimatology group has done studies of HD209458b using both a standard deep interior (SDI) and hot deep interior (HDI) initial condition; however, previous works by the group have found that the HDI initial condition is closer to the final state than SDI initial condition so we study that case exclusively.

Within each directory there are the following files:

atmosa.d*  - These are the restart dumps at the end of the run
atmosa.pc* - These are diagnostic outputs (in pp format) from the UM.
hd209_800k_11.5.astart - Only in the HDI_Clear directory.  This is the restart dump used as the clear output. It is also the starting output for all other simulations (see details in the paper).

cloud_data.nc  - This contains the mass mixing ratios and particle sizes as well as Kzz data, in NetCDF format.
pressure.nc    - The gas pressure, in NetCDF format.
temperature.nc - The gas temperature, in NetCDF format.
velocity.nc    - The gas velocities, in NetCDF format.

transit_data.nc and transit_data_day - The nightside contribution (first file) and dayside contribution (second file) to the transit.  These need to be averaged as discussed in the paper.  Again, in NetCDF format.

For the P13 f_sed = 2 run, there are additional transit outputs for different postprocessings with single cloud species (as discussed in the paper).  These are identified with the postfix _(species name).nc

The emission data are included as processed text files.  Including all the emission data output by the UM would have added 20GB to the repository and those data can be regenerated quickly using the restart dumps.

phase-4.5micron.txt  and phase-WFC.txt - These contain the phase curves for each run.  

dayside-emission.txt - This contains the dayside emission as a function of wavelength used to make plots 12 and 13.

The transmission spectra for all simulations, measured in Rp/Rs, are found in transmission-RpRs.txt.   

NOTE: Some of the outputs may have incorrect timestamps as they had to be restarted mid-run and didn't inherit the preivous timestep information.  